https://shubh2565.r-universe.devRecent package updates in shubh2565R-universehttps://github.com/shubh2565.pnghttps://shubh2565.r-universe.devTue, 28 Apr 2026 13:05:46 GMTshubhamagrawal2706@gmail.com (Shubham Agrawal)To facilitate and streamline phosphoproteomics data analysis, we developed SmartPhos, an R package for the pre-processing, quality control, and exploratory analysis of phosphoproteomics data generated by MaxQuant and Spectronaut. The package can be used either through the R command line or through an interactive ShinyApp called SmartPhos Explorer. The package contains methods such as normalization and normalization correction, transformation, imputation, batch effect correction, PCA, heatmap, differential expression, time-series clustering, gene set enrichment analysis, and kinase activity inference.https://github.com/r-universe/bioc/actions/runs/38072526336Tue, 28 Apr 2026 13:05:46 GMTSmartPhos1.3.0successhttps://bioc.r-universe.devhttps://github.com/bioc/SmartPhosSmartPhos_Shiny.RmdSmartPhos_Shiny.htmlSmartPhos Explorer: a one-stop data analysis platform for proteomic and phosphoproteomic data2024-11-26 12:57:232025-07-22 08:51:03SmartPhos.RmdSmartPhos.htmlSmartPhos: a pipeline for processing and analysis of phosphoproteomic data2024-12-10 11:58:352025-07-24 13:14:58